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Engine Compatibility pass / FAIL (R) pass / FAIL (L) d1 (R) d1 (L)
AMICIhttps://docs.biosimulators.org/Biosimulators_AMICI/
✅ PASSThe file extensions ('sbml', 'sedml') suggest the input file types are SBML and SED-ML.

SED-ML and SBML are compatible with AMICI.
❌ FAILview
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logs

ERROR MESSAGE:
Reached maximum number of steps
❌ FAILERROR MESSAGE:
Reached maximum number of steps

 plot plot
BioNetGenhttps://docs.biosimulators.org/Biosimulators_BioNetGen/
⚠ XFAILEXPECTED FAIL

Only BNGL, SED-ML are compatible with BioNetGen.
⚠ XFAILEXPECTED FAIL

view
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logs

ERROR MESSAGE:
The COMBINE/OMEX did not execute successfully:

The SED document did not execute successfully:

Language for model net1 is not supported.
- Model language urn:sedml:language:sbml is not supported. Models must be in BNGL format (e.g., sed:model/@language must match ^urn:sedml:language:bngl(\.$) such as urn:sedml:language:bngl).

ERROR TYPE:
CombineArchiveExecutionError
⚠ XFAILEXPECTED FAIL

ERROR MESSAGE:
The COMBINE/OMEX did not execute successfully:

The SED document did not execute successfully:

Language for model net1 is not supported.
- Model language urn:sedml:language:sbml is not supported. Models must be in BNGL format (e.g., sed:model/@language must match ^urn:sedml:language:bngl(\.$) such as urn:sedml:language:bngl).

ERROR TYPE:
CombineArchiveExecutionError
 plot plot
BoolNethttps://docs.biosimulators.org/Biosimulators_BoolNet/
⚠ XFAILEXPECTED FAIL

Only SBML-qual, SED-ML are compatible with BoolNet.
⚠ XFAILEXPECTED FAIL

view
download
logs

ERROR MESSAGE:
The COMBINE/OMEX did not execute successfully:

The SED document did not execute successfully:

Simulation sim1 is invalid.
- Number of points (20000) must be equal to the difference between the output end (200.0) and start times (0.0).

ERROR TYPE:
CombineArchiveExecutionError
⚠ XFAILEXPECTED FAIL

ERROR MESSAGE:
The COMBINE/OMEX did not execute successfully:

The SED document did not execute successfully:

Simulation sim1 is invalid.
- Number of points (20000) must be equal to the difference between the output end (200.0) and start times (0.0).

ERROR TYPE:
CombineArchiveExecutionError
 plot plot
Brian 2https://docs.biosimulators.org/Biosimulators_pyNeuroML/
⚠ XFAILEXPECTED FAIL

Only NeuroML, SED-ML are compatible with Brian 2.
⚠ XFAILEXPECTED FAIL

view
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logs

ERROR MESSAGE:
No module named 'libsbml'

ERROR TYPE:
ModuleNotFoundError
⚠ XFAILEXPECTED FAIL

ERROR MESSAGE:
No module named 'libsbml'

ERROR TYPE:
ModuleNotFoundError
CBMPyhttps://docs.biosimulators.org/Biosimulators_CBMPy/
✅ PASSThe file extensions ('sbml', 'sedml') suggest the input file types are SBML and SED-ML.

SED-ML and SBML are compatible with CBMPy.
❌ FAILview
download
logs

ERROR MESSAGE:
The COMBINE/OMEX did not execute successfully:

The SED document did not execute successfully:

UniformTimeCourseSimulation sim1 is not supported.
- Simulation sim1 of type UniformTimeCourseSimulation is not supported. Simulation must be an instance of one of the following:
- SteadyStateSimulation

ERROR TYPE:
CombineArchiveExecutionError
❌ FAILERROR MESSAGE:
The COMBINE/OMEX did not execute successfully:

The SED document did not execute successfully:

UniformTimeCourseSimulation sim1 is not supported.
- Simulation sim1 of type UniformTimeCourseSimulation is not supported. Simulation must be an instance of one of the following:
- SteadyStateSimulation

ERROR TYPE:
CombineArchiveExecutionError
 plot plot
COBRApyhttps://docs.biosimulators.org/Biosimulators_COBRApy/
Only allows steady state simulations
✅ PASSThe file extensions ('sbml', 'sedml') suggest the input file types are SBML and SED-ML.

SED-ML and SBML are compatible with COBRApy.
❌ FAILview
download
logs

ERROR MESSAGE:
The COMBINE/OMEX did not execute successfully:

The SED document did not execute successfully:

UniformTimeCourseSimulation sim1 is not supported.
- Simulation sim1 of type UniformTimeCourseSimulation is not supported. Simulation must be an instance of one of the following:
- SteadyStateSimulation

ERROR TYPE:
CombineArchiveExecutionError
❌ FAILERROR MESSAGE:
The COMBINE/OMEX did not execute successfully:

The SED document did not execute successfully:

UniformTimeCourseSimulation sim1 is not supported.
- Simulation sim1 of type UniformTimeCourseSimulation is not supported. Simulation must be an instance of one of the following:
- SteadyStateSimulation

ERROR TYPE:
CombineArchiveExecutionError
 plot plot
COPASIhttps://docs.biosimulators.org/Biosimulators_COPASI/
✅ PASSThe file extensions ('sbml', 'sedml') suggest the input file types are SBML and SED-ML.

SED-ML and SBML are compatible with COPASI.
✅ PASSview
download
logs

 ✅ PASS plot plot
GillesPy2https://docs.biosimulators.org/Biosimulators_GillesPy2/
✅ PASSThe file extensions ('sbml', 'sedml') suggest the input file types are SBML and SED-ML.

SED-ML and SBML are compatible with GillesPy2.
✅ PASSview
download
logs

 ✅ PASS plot plot
GINsimhttps://docs.biosimulators.org/Biosimulators_GINsim/
⚠ XFAILEXPECTED FAIL

Only SBML-qual, SED-ML are compatible with GINsim.
⚠ XFAILEXPECTED FAIL

view
download
logs

ERROR MESSAGE:
The COMBINE/OMEX did not execute successfully:

The SED document did not execute successfully:

Simulation sim1 is invalid.
- The interval between the output start and time time must be an integer multiple of the number of steps, not 0.01:
Output start time: 0.0
Output end time: 200.0
Number of steps: 20000

ERROR TYPE:
CombineArchiveExecutionError
⚠ XFAILEXPECTED FAIL

ERROR MESSAGE:
The COMBINE/OMEX did not execute successfully:

The SED document did not execute successfully:

Simulation sim1 is invalid.
- The interval between the output start and time time must be an integer multiple of the number of steps, not 0.01:
Output start time: 0.0
Output end time: 200.0
Number of steps: 20000

ERROR TYPE:
CombineArchiveExecutionError
 plot plot
LibSBMLSimhttps://docs.biosimulators.org/Biosimulators_LibSBMLSim/
✅ PASSThe file extensions ('sbml', 'sedml') suggest the input file types are SBML and SED-ML.

SED-ML and SBML are compatible with LibSBMLSim.
✅ PASSview
download
logs

 ✅ PASS plot plot
MASSpyhttps://docs.biosimulators.org/Biosimulators_MASSpy/
✅ PASSThe file extensions ('sbml', 'sedml') suggest the input file types are SBML and SED-ML.

SED-ML and SBML are compatible with MASSpy.
✅ PASSview
download
logs
❌ FAILERROR MESSAGE:
The COMBINE/OMEX did not execute successfully:

The SED document did not execute successfully:

Something went wrong reading the SBML model. Most likely the SBML model is not valid. Please check that your model is valid using the mass.io.sbml.validate_sbml_model function or via the online validator at http://sbml.org/validator .
(model, errors) = validate_sbml_model(filename)
If the model is valid and cannot be read please open an issue at https://github.com/SBRG/masspy/issues .

ERROR TYPE:
CombineArchiveExecutionError
 plot plot
NetPyNEhttps://docs.biosimulators.org/Biosimulators_pyNeuroML/
⚠ XFAILEXPECTED FAIL

Only NeuroML, SED-ML are compatible with NetPyNE.
⚠ XFAILEXPECTED FAIL

view
download
logs

ERROR MESSAGE:
No module named 'libsbml'

ERROR TYPE:
ModuleNotFoundError
⚠ XFAILEXPECTED FAIL

ERROR MESSAGE:
No module named 'libsbml'

ERROR TYPE:
ModuleNotFoundError
NEURONhttps://docs.biosimulators.org/Biosimulators_pyNeuroML/
⚠ XFAILEXPECTED FAIL

Only NeuroML, SED-ML are compatible with NEURON.
⚠ XFAILEXPECTED FAIL

view
download
logs

ERROR MESSAGE:
No module named 'libsbml'

ERROR TYPE:
ModuleNotFoundError
⚠ XFAILEXPECTED FAIL

ERROR MESSAGE:
No module named 'libsbml'

ERROR TYPE:
ModuleNotFoundError
OpenCORhttps://docs.biosimulators.org/Biosimulators_OpenCOR/
⚠ XFAILEXPECTED FAIL

Only CellML, SED-ML are compatible with OpenCOR.
⚠ XFAILEXPECTED FAIL

view
download
logs

ERROR MESSAGE:
No module named 'libsbml'

ERROR TYPE:
ModuleNotFoundError
⚠ XFAILEXPECTED FAIL

ERROR MESSAGE:
No module named 'libsbml'

ERROR TYPE:
ModuleNotFoundError
pyNeuroMLhttps://docs.biosimulators.org/Biosimulators_pyNeuroML/
⚠ XFAILEXPECTED FAIL

Only NeuroML, SED-ML are compatible with pyNeuroML.
⚠ XFAILEXPECTED FAIL

view
download
logs

ERROR MESSAGE:
No module named 'libsbml'

ERROR TYPE:
ModuleNotFoundError
⚠ XFAILEXPECTED FAIL

ERROR MESSAGE:
No module named 'libsbml'

ERROR TYPE:
ModuleNotFoundError
PySCeShttps://docs.biosimulators.org/Biosimulators_PySCeS/
✅ PASSThe file extensions ('sbml', 'sedml') suggest the input file types are SBML and SED-ML.

SED-ML and SBML are compatible with PySCeS.
❌ FAILview
download
logs

ERROR MESSAGE:
The COMBINE/OMEX did not execute successfully:

The SED document did not execute successfully:

class 'AssertionError':
Unable to generate Stoichiometric Matrix! model has:
0 reactions
0 species
what did you have in mind?


ERROR TYPE:
CombineArchiveExecutionError
❌ FAILERROR MESSAGE:
The COMBINE/OMEX did not execute successfully:

The SED document did not execute successfully:

class 'AssertionError':
Unable to generate Stoichiometric Matrix! model has:
0 reactions
0 species
what did you have in mind?


ERROR TYPE:
CombineArchiveExecutionError
 plot plot
RBApyhttps://docs.biosimulators.org/Biosimulators_RBApy/
⚠ XFAILEXPECTED FAIL

Only RBApy, SED-ML are compatible with RBApy.
⚠ XFAILEXPECTED FAIL

view
download
logs

ERROR MESSAGE:
The COMBINE/OMEX did not execute successfully:

The SED document did not execute successfully:

Language for model net1 is not supported.
- Model language urn:sedml:language:sbml is not supported. Models must be in RBA format (e.g., sed:model/@language must match ^urn:sedml:language:rba(\.$) such as urn:sedml:language:rba).

ERROR TYPE:
CombineArchiveExecutionError
⚠ XFAILEXPECTED FAIL

ERROR MESSAGE:
The COMBINE/OMEX did not execute successfully:

The SED document did not execute successfully:

Language for model net1 is not supported.
- Model language urn:sedml:language:sbml is not supported. Models must be in RBA format (e.g., sed:model/@language must match ^urn:sedml:language:rba(\.$) such as urn:sedml:language:rba).

ERROR TYPE:
CombineArchiveExecutionError
 plot plot
Smoldynhttps://smoldyn.readthedocs.io/en/latest/python/api.html#sed-ml-combine-biosimulators-api
⚠ XFAILEXPECTED FAIL

Only Smoldyn, SED-ML are compatible with Smoldyn.
⚠ XFAILEXPECTED FAIL

view
download
logs

ERROR MESSAGE:
No module named 'libsbml'

ERROR TYPE:
ModuleNotFoundError
⚠ XFAILEXPECTED FAIL

ERROR MESSAGE:
Error unknown. The log.yml containing error information was not found.
Telluriumhttps://docs.biosimulators.org/Biosimulators_tellurium/
✅ PASSThe file extensions ('sbml', 'sedml') suggest the input file types are SBML and SED-ML.

SED-ML and SBML are compatible with Tellurium.
✅ PASSview
download
logs

 ✅ PASS plot plot
VCellhttps://github.com/virtualcell/vcell
✅ PASSThe file extensions ('sbml', 'sedml') suggest the input file types are SBML and SED-ML.

SED-ML, BNGL and SBML are compatible with VCell.
❌ FAILview
download
logs

ERROR MESSAGE:
status: QUEUED
❌ FAILERROR MESSAGE:
Runtime Exception
XPPhttps://docs.biosimulators.org/Biosimulators_XPP/
⚠ XFAILEXPECTED FAIL

Only XPP, SED-ML are compatible with XPP.
⚠ XFAILEXPECTED FAIL

view
download
logs

ERROR MESSAGE:
No module named 'libsbml'

ERROR TYPE:
ModuleNotFoundError
⚠ XFAILEXPECTED FAIL

ERROR MESSAGE:
No module named 'libsbml'

ERROR TYPE:
ModuleNotFoundError