>>> from astropy import units as u
>>> from astroquery.atomic import AtomicLineList
>>> wavelength_range = (15 * u.nm, 1.5e+16 * u.Hz)
>>> AtomicLineList.query_object(wavelength_range=wavelength_range, wavelength_type='Air',
... wavelength_accuracy=20, element_spectrum='C II-IV')
Running it in ipython I get the expected result (pending some not yet merged changes that get rid of a few warnings):
<Table length=3>
LAMBDA VAC ANG SPECTRUM TT CONFIGURATION TERM J J A_ki LEVEL ENERGY CM 1
float64 str4 str2 str14 str6 str5 float64 str18
-------------- -------- ---- -------------- ------ ----- ----------- ------------------
196.8874 C IV E1 1s2.2s-1s2.12p 2S-2Po 1/2-* 91300000.0 0.00 - 507904.40
197.7992 C IV E1 1s2.2s-1s2.11p 2S-2Po 1/2-* 118000000.0 0.00 - 505563.30
199.0122 C IV E1 1s2.2s-1s2.10p 2S-2Po 1/2-* 157000000.0 0.00 - 502481.80
========================================================================= FAILURES =========================================================================
___________________________________________________________________ [doctest] atomic.rst ___________________________________________________________________
023 In the following Python session you can see the ``atomic`` package in
024 action. Note that Hz is actually not a supported unit by Atomic Line List,
025 the atomic package takes care to support all spectral units.
026
027 .. doctest-remote-data::
028
029 >>> from astropy import units as u
030 >>> from astroquery.atomic import AtomicLineList
031 >>> wavelength_range = (15 * u.nm, 1.5e+16 * u.Hz)
032 >>> AtomicLineList.query_object(wavelength_range=wavelength_range, wavelength_type='Air',
UNEXPECTED EXCEPTION: RecursionError('maximum recursion depth exceeded while calling a Python object')
Traceback (most recent call last):
File "/Users/bsipocz/.pyenv/versions/3.9.1/lib/python3.9/doctest.py", line 1336, in __run
exec(compile(example.source, filename, "single",
File "<doctest atomic.rst[3]>", line 1, in <module>
File "/private/var/folders/dc/hsm7tqpx2d57n7vb3k1l81xw0000gq/T/astroquery-test-r53oieer/lib/python3.9/site-packages/astroquery/atomic/core.py", line 151, in query_object
response = self.query_object_async(
File "/private/var/folders/dc/hsm7tqpx2d57n7vb3k1l81xw0000gq/T/astroquery-test-r53oieer/lib/python3.9/site-packages/astroquery/atomic/core.py", line 246, in query_object_async
response = self._submit_form(input_payload, cache=cache)
File "/private/var/folders/dc/hsm7tqpx2d57n7vb3k1l81xw0000gq/T/astroquery-test-r53oieer/lib/python3.9/site-packages/astroquery/atomic/core.py", line 299, in _submit_form
response = self._request("POST", url=url, data=payload,
File "/private/var/folders/dc/hsm7tqpx2d57n7vb3k1l81xw0000gq/T/astroquery-test-r53oieer/lib/python3.9/site-packages/astroquery/query.py", line 324, in _request
to_cache(response, query.request_file(self.cache_location))
File "/private/var/folders/dc/hsm7tqpx2d57n7vb3k1l81xw0000gq/T/astroquery-test-r53oieer/lib/python3.9/site-packages/astroquery/query.py", line 30, in to_cache
response = copy.deepcopy(response)
File "/Users/bsipocz/.pyenv/versions/3.9.1/lib/python3.9/copy.py", line 172, in deepcopy
y = _reconstruct(x, memo, *rv)
File "/Users/bsipocz/.pyenv/versions/3.9.1/lib/python3.9/copy.py", line 270, in _reconstruct
state = deepcopy(state, memo)
File "/Users/bsipocz/.pyenv/versions/3.9.1/lib/python3.9/copy.py", line 146, in deepcopy
y = copier(x, memo)
File "/Users/bsipocz/.pyenv/versions/3.9.1/lib/python3.9/copy.py", line 230, in _deepcopy_dict
y[deepcopy(key, memo)] = deepcopy(value, memo)
File "/Users/bsipocz/.pyenv/versions/3.9.1/lib/python3.9/copy.py", line 172, in deepcopy
y = _reconstruct(x, memo, *rv)
File "/Users/bsipocz/.pyenv/versions/3.9.1/lib/python3.9/copy.py", line 270, in _reconstruct
state = deepcopy(state, memo)
...
File "/Users/bsipocz/.pyenv/versions/3.9.1/lib/python3.9/copy.py", line 146, in deepcopy
y = copier(x, memo)
File "/Users/bsipocz/.pyenv/versions/3.9.1/lib/python3.9/copy.py", line 230, in _deepcopy_dict
y[deepcopy(key, memo)] = deepcopy(value, memo)
File "/Users/bsipocz/.pyenv/versions/3.9.1/lib/python3.9/copy.py", line 172, in deepcopy
y = _reconstruct(x, memo, *rv)
File "/Users/bsipocz/.pyenv/versions/3.9.1/lib/python3.9/copy.py", line 270, in _reconstruct
state = deepcopy(state, memo)
File "/Users/bsipocz/.pyenv/versions/3.9.1/lib/python3.9/copy.py", line 146, in deepcopy
y = copier(x, memo)
File "/Users/bsipocz/.pyenv/versions/3.9.1/lib/python3.9/copy.py", line 230, in _deepcopy_dict
y[deepcopy(key, memo)] = deepcopy(value, memo)
File "/Users/bsipocz/.pyenv/versions/3.9.1/lib/python3.9/copy.py", line 146, in deepcopy
y = copier(x, memo)
File "/Users/bsipocz/.pyenv/versions/3.9.1/lib/python3.9/copy.py", line 205, in _deepcopy_list
append(deepcopy(a, memo))
File "/Users/bsipocz/.pyenv/versions/3.9.1/lib/python3.9/copy.py", line 137, in deepcopy
d = id(x)
RecursionError: maximum recursion depth exceeded while calling a Python object
/private/var/folders/dc/hsm7tqpx2d57n7vb3k1l81xw0000gq/T/astroquery-test-r53oieer/lib/python3.9/site-packages/docs/atomic/atomic.rst:32: UnexpectedException
================================================================= short test summary info ==================================================================
FAILED docs/atomic/atomic.rst::atomic.rst
=============================================================== 1 failed, 9 passed in 3.35s ================================================================
I haven't seen this type of issues with any of the other modules, so it may not be a generic caching issue, but something specific to atomic.
I'm not exatly sure what's going on here with this docs example:
Running it in ipython I get the expected result (pending some not yet merged changes that get rid of a few warnings):
Running it with doctest OTOH:
All the while if I add the
cache=Falsekwarg the doctesting passes as expected, too.I haven't seen this type of issues with any of the other modules, so it may not be a generic caching issue, but something specific to atomic.