master

BranchesTags

Go to file

Code

Open more actions menu

Folders and files

Name		Name	Last commit message	Last commit date
Latest commit   History 3 Commits 3 Commits
Ciandrini		Ciandrini
Gritsenko		Gritsenko
2plots.jpg		2plots.jpg
5utrSequences.txt		5utrSequences.txt
AllGoTermsStress.csv		AllGoTermsStress.csv
AllGoTermsStress.txt		AllGoTermsStress.txt
BasesFreqNewDataSetScaledHeatmap.png		BasesFreqNewDataSetScaledHeatmap.png
CE_ciandrini_plusEMpty.png		CE_ciandrini_plusEMpty.png
CEfor100bpCiandrini.png		CEfor100bpCiandrini.png
CEperBaseCiandriniSeparatePlots.png		CEperBaseCiandriniSeparatePlots.png
CEperBaseCiandriniSeparatePlots.svg		CEperBaseCiandriniSeparatePlots.svg
Conditional Entropy per base for 'ciandrini.csv'.png		Conditional Entropy per base for 'ciandrini.csv'.png
Conditional Entropy per base for 'newDataset.csv'.png		Conditional Entropy per base for 'newDataset.csv'.png
Corr-Pvalue-Test.svg		Corr-Pvalue-Test.svg
CorrelationCoefficient for 'newDataset.csv'.png		CorrelationCoefficient for 'newDataset.csv'.png
CorrelationCoefficientFor16Chrom'newDataset.csv'.png		CorrelationCoefficientFor16Chrom'newDataset.csv'.png
CorrelationStress'newDataset.csv'.png		CorrelationStress'newDataset.csv'.png
CorrelationsCiandrini.png		CorrelationsCiandrini.png
DBXRef.py		DBXRef.py
Dataset_1.csv		Dataset_1.csv
DiffsAllexeyCiandrini.txt		DiffsAllexeyCiandrini.txt
Document.aux		Document.aux
Document.bbl		Document.bbl
Document.bib		Document.bib
Document.blg		Document.blg
Document.fdb_latexmk		Document.fdb_latexmk
Document.log		Document.log
Document.out		Document.out
Document.pdf		Document.pdf
Document.tex		Document.tex
EftychiaParseGff3.py		EftychiaParseGff3.py
HERE.svg		HERE.svg
InitRatesAlexeyCiandrini.png		InitRatesAlexeyCiandrini.png
InitRatesBothAlexeyCiandrini.png		InitRatesBothAlexeyCiandrini.png
Intro.odt		Intro.odt
NagalaYass.txt		NagalaYass.txt
Nagalakshmi_2008_UTRs.gff3		Nagalakshmi_2008_UTRs.gff3
Plot of the INit Rates for 'newDataset.csv'.png		Plot of the INit Rates for 'newDataset.csv'.png
Plot of the Length for 'ciandrini.csv'.png		Plot of the Length for 'ciandrini.csv'.png
Plot of the Length for 'newDataset.csv'.png		Plot of the Length for 'newDataset.csv'.png
Plot of the MFE for 'ciandrini.csv'.png		Plot of the MFE for 'ciandrini.csv'.png
Plot of the MFE for 'newDataset.csv'.png		Plot of the MFE for 'newDataset.csv'.png
Plot of the Summations for 'newDataset.csv'.png		Plot of the Summations for 'newDataset.csv'.png
Plot of the Summatiosn for 'ciandrini.csv'.png		Plot of the Summatiosn for 'ciandrini.csv'.png
README.md		README.md
Response to Stress.txt		Response to Stress.txt
ScaledSummationsCiandrini.png		ScaledSummationsCiandrini.png
ScaledSummationsNewDataset.png		ScaledSummationsNewDataset.png
ScatterPltMfeCiandrini.png		ScatterPltMfeCiandrini.png
ScoresPersChr.doc		ScoresPersChr.doc
TheDocument.odt		TheDocument.odt
Useful.txt		Useful.txt
Yassour_2009_UTRs.gff3		Yassour_2009_UTRs.gff3
alexeyGOtermsResult.csv		alexeyGOtermsResult.csv
alexey_res.csv		alexey_res.csv
alexey_result.json		alexey_result.json
chr1.fsa		chr1.fsa
chr10.fsa		chr10.fsa
chr11.fsa		chr11.fsa
chr12.fsa		chr12.fsa
chr13.fsa		chr13.fsa
chr14.fsa		chr14.fsa
chr15.fsa		chr15.fsa
chr16.fsa		chr16.fsa
chr17.fsa		chr17.fsa
chr2.fsa		chr2.fsa
chr3.fsa		chr3.fsa
chr4.fsa		chr4.fsa
chr5.fsa		chr5.fsa
chr6.fsa		chr6.fsa
chr7.fsa		chr7.fsa
chr8.fsa		chr8.fsa
chr9.fsa		chr9.fsa
ciandrini.csv		ciandrini.csv
ciandriniALLGOTerms.csv		ciandriniALLGOTerms.csv
ciandrini_res.csv		ciandrini_res.csv
ciandrini_result.json		ciandrini_result.json
conditionalEntropy.py		conditionalEntropy.py
cutPieces.py		cutPieces.py
doregression.py		doregression.py
extraAlexey.csv		extraAlexey.csv
finding_genes_in_list_with_SGD_Systematic_Name.py		finding_genes_in_list_with_SGD_Systematic_Name.py
firstGenesPlot.py		firstGenesPlot.py
go_slim_mapping.tab		go_slim_mapping.tab
goose.txt		goose.txt
matoplotlibExamples.py		matoplotlibExamples.py
mfesalexey.txt		mfesalexey.txt
mySecsAlexey.fa		mySecsAlexey.fa
mySecsCiandrini.fa		mySecsCiandrini.fa
mySecsCiandrini.txt		mySecsCiandrini.txt
mySecsNewDataSet.txt		mySecsNewDataSet.txt
myfunctions.py		myfunctions.py
newDataset.csv		newDataset.csv
parse-gff3.py		parse-gff3.py
parsingGff3Biopython.py		parsingGff3Biopython.py
plotlies.py		plotlies.py
readtext.py		readtext.py
regressionpart.py		regressionpart.py
response_to_stress_annotations.txt		response_to_stress_annotations.txt
response_to_stress_ontology.png		response_to_stress_ontology.png
View all files

Repository files navigation

Edith

About

No description, website, or topics provided.

Resources

Readme

Activity

Stars

0 stars

Watchers

1 watching

Forks

0 forks

Report repository

Releases

Packages

Contributors

Languages