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seqpac Public
Forked from OestLab/seqpacseqpac - A Framework for small RNA analysis in R using Sequence-Based Counts
R UpdatedAug 18, 2026 -
quindecagon Public
quindecagon: 15 Faces of Security
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bfxpm Public
Bioinformatician's Project Manager
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gms-nallo Public
Forked from genomic-medicine-sweden/nalloAn analysis pipeline for long-reads from both PacBio and Oxford Nanopore Technologies (ONT), written in Nextflow.
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Methylation Dashboard wrapper for gms-nallo (https://github.com/genomic-medicine-sweden/nallo)
HTML MIT License UpdatedMay 7, 2026 -
DNA methylome-based validation of induced sputum as an effective protocol to study lung immunity: construction of a classifier of pulmonary cell types
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Awesome-Bioinformatics Public
Forked from danielecook/Awesome-BioinformaticsA curated list of awesome Bioinformatics libraries and software.
UpdatedApr 7, 2026 -
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Shiny-WGCNA Public
Shiny app for WGCNA for RNAseq and DNA methylation data
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ComplexPCA Public
a ggplot PCA with complex annotation
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olinkWrapper Public
A Shiny interface to analyse Olink data
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TwistMethylFlow Public
A NextFlow pipeline for Twist NGS DNA Methylation data analysis
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gsalit Public
A Streamlit application for global screening analysis, built with Python.
Python MIT License UpdatedNov 21, 2025 -
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ShinyOlink Public archive
A Shiny interface to analyse Olink data
HTML GNU General Public License v3.0 UpdatedAug 25, 2025 -
jyotirmoymanifest Public
Author manifest to add in Rscript
R GNU General Public License v3.0 UpdatedJun 25, 2025 -
DataScanR Public
Forked from ilo21/DataScanR -
DiffMethSeq Public
A NextFlow pipeline to perform differential methylation analysis from bismark-aligned files
R MIT License UpdatedJan 29, 2025 -
methylr Public
methylR: a single shiny solution from sequencer data to pathway analysis
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JASEN Public
Forked from genomic-medicine-sweden/jasenEpitypification pipeline for clinical NGS data. Written in NextFlow, Python & Bash.
Nextflow GNU General Public License v3.0 UpdatedAug 16, 2024 -
Image-Processing-MATLAB Public
Acquired time lapse images from the IncuCyte® and processed with MATLAB to create a time-lapse video of one particular aggregate of bacteria
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webr Public
Forked from r-wasm/webrThis project aims to compile the statistical language R into WASM for use in a browser, via Emscripten.
TypeScript Other UpdatedMar 24, 2023 -
gms-artic Public
Forked from genomic-medicine-sweden/gms-articA Nextflow pipeline for running the ARTIC network's fieldbioinformatics tools (https://github.com/artic-network/fieldbioinformatics), with a focus on ncov2019
Nextflow GNU Affero General Public License v3.0 UpdatedFeb 17, 2023 -
awesome-genome-visualization Public
Forked from cmdcolin/awesome-genome-visualizationA list of interesting genome browser or genome-browser-like implementations
TypeScript UpdatedNov 6, 2022 -
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pb-CpG-tools Public
Forked from PacificBiosciences/pb-CpG-toolsCollection of tools for the analysis of CpG data
Python BSD 3-Clause Clear License UpdatedMay 31, 2022 -
docker-sc2reporter Public
Forked from genomic-medicine-sweden/docker-sc2reporterDockerized version of the sc2reporter proggram.
JavaScript GNU General Public License v2.0 UpdatedApr 5, 2022 -
megalodon Public
Forked from nanoporetech/megalodonMegalodon is a research command line tool to extract high accuracy modified base and sequence variant calls from raw nanopore reads by anchoring the information rich basecalling neural network out…
Python Other UpdatedMar 25, 2022 -
longqc.nf Public
Forked from grpiccoli/longqc.nfLongQC is a tool for the data quality control of the PacBio and ONT long reads.
Dockerfile MIT License UpdatedMar 8, 2022
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