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Bond parsing in PDB format now uses chain ids correctly - #961

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josemduarte merged 2 commits into
biojava:masterfrom
josemduarte:issue943
Sep 20, 2021
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Bond parsing in PDB format now uses chain ids correctly#961
josemduarte merged 2 commits into
biojava:masterfrom
josemduarte:issue943

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@josemduarte

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This should fix #943

@richarda23 I've created a new integration test with junit5. Can you double check that's ok? Question: is the junit-vintage-engine required?

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richarda23 commented Aug 31, 2021

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Looks fine! The vintage engine is required to run existing tests in Junit3/4. I think if all tests use junit5 only, then it can be removed.

Maybe the Contributing.md file could be updated to say tests are running using junit4/5 and writing new tests in junit 5 is encouraged?

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The CI problems are still not solved. I'll merge this after testing it locally.

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josemduarte merged commit 6e3ccb0 into biojava:master Sep 20, 2021
jnbdz pushed a commit to jnbdz/biojava that referenced this pull request Aug 2, 2026
Bond parsing in PDB format now uses chain ids correctly
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NPE when parsing certain PDB structures with "params.setCreateAtomBonds(true)"

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