WebGL-based viewer for volumetric data

Generates neuroscience videos from high-level descriptions using Blender or VVDViewer.

A rusty mutex watershed

Transform 3D cell surfaces into different representations including topographic maps, 3D spheres, and 2D images for doing optimized quantification, data analysis and machine learning.

A collection of utility functions for dealing with dvid data

Fast Quadratic Mesh Simplification

Skeletonize densely labeled 3D image segmentations with TEASAR. (Medial Axis Transform)

A package for a parallelized Rust-based implementation of Mutex Watershed image segmentation, built using MongoDB and Daisy.

scripts for blockwise global agglomeration using mutex watershed

Flood-Filling Networks for instance segmentation in 3d volumes.