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add per-frame shift calculation for tiling-based multiview lateral registration #934

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add per-frame shift calculation for tiling-based multiview lateral registration #934

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f239341
add per-frame shift calculation for multiview
barentine Mar 7, 2021
676fadf
whoops, parameter doc
barentine Mar 7, 2021
14960a9
Merge branch 'master' of https://github.com/python-microscopy/python-…
barentine Mar 8, 2021
281bec9
use findClumpsN with nFrames 1 to get same frame only
barentine Mar 8, 2021
799bd6d
use findclumpsN with nFrames 1 to get clumping only on same frame
barentine Mar 8, 2021
8b675ec
add rule chain for tiled bead shiftmap generation
barentine Mar 8, 2021
4828bbb
synt fix
barentine Mar 8, 2021
d3bc6ac
Merge branch 'master' of https://github.com/python-microscopy/python-…
barentine Mar 16, 2021
79e2566
Merge branch 'master' of https://github.com/python-microscopy/python-…
barentine Mar 22, 2021
a8c2e1a
use findclumps refactor
barentine Mar 22, 2021
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Merge branch 'master' of https://github.com/python-microscopy/python-… 
…microscopy into tilereg
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@barentine
barentine committed Mar 22, 2021
commit 79e256695774be51fde170d21bcd53efc6e43269
3 changes: 1 addition & 2 deletions PYME/Analysis/points/multiview.py
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Original file line number Diff line number Diff line change
@@ -1,6 +1,5 @@

import numpy as np
from PYME.Analysis.points.DeClump import deClump

def load_shiftmap(uri):
"""
Expand Down Expand Up @@ -283,7 +282,7 @@ def pair_molecules(t_index, x0, y0, which_chan, delta_x=[None], appear_in=np.ara
if not delta_x[0]:
delta_x = 100.*np.ones_like(x)
# group localizations
assigned = deClump.findClumps(t_index.astype(np.int32), x, y, delta_x, n_frame_sep)
assigned = findClumps(t_index.astype(np.int32), x, y, delta_x, n_frame_sep)
# print assigned.min()

# only look at clumps with localizations from each channel
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