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@qiime2

QIIME 2

Welcome to the QIIME 2 GitHub Organization! 👋

If you're a QIIME 2 user or developer, or are thinking about becoming one, refer to our Support Guidelines for details on how to learn or get help with QIIME 2.

If you're interested in contributing to repositories in the qiime2 GitHub organization, please start by reading our Contributing Guidelines.

This organization is primarily managed by the Caporaso Lab at Northern Arizona University, but has contributors from all over the world. If you have questions that aren't covered in the resources above, the best way to reach us is on the QIIME 2 Forum - it's where we hang out.

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  1. distributions distributions Public

    Python 5 11

  2. q2cli q2cli Public

    Command line interface for QIIME 2

    Python 20 29

  3. docs docs Public archive

    Python 21 59

Repositories

Showing 10 of 82 repositories
  • q2-boots Public

    q2-boots: bootstrapped and rarefaction-based alpha and beta diversity analyses 🥾

    qiime2/q2-boots’s past year of commit activity
    Python 3 BSD-3-Clause 8 11 3 Updated Jul 6, 2026
  • library Public

    A website for sharing QIIME 2 Plugins

    qiime2/library’s past year of commit activity
    Svelte 0 BSD-3-Clause 4 3 2 Updated Jul 6, 2026
  • q2-vizard Public

    The first choice of wizard lizards for interactive, generalized microbiome data visualization!

    qiime2/q2-vizard’s past year of commit activity
    Python 1 BSD-3-Clause 13 6 0 Updated Jul 6, 2026
  • q2-feature-table Public

    QIIME 2 plugin supporting operations on feature tables.

    qiime2/q2-feature-table’s past year of commit activity
    Python 2 BSD-3-Clause 41 22 (2 issues need help) 2 Updated Jul 6, 2026
  • q2view Public

    A web-based "serverless" viewer of QIIME 2 Artifacts and Visualizations

    qiime2/q2view’s past year of commit activity
    TypeScript 1 BSD-3-Clause 3 1 0 Updated Jul 6, 2026
  • distributions Public
    qiime2/distributions’s past year of commit activity
    Python 5 BSD-3-Clause 11 5 3 Updated Jul 5, 2026
  • q2cli Public

    Command line interface for QIIME 2

    qiime2/q2cli’s past year of commit activity
    Python 20 BSD-3-Clause 29 12 4 Updated Jul 3, 2026
  • q2-taxa Public
    qiime2/q2-taxa’s past year of commit activity
    Python 3 BSD-3-Clause 31 41 1 Updated Jun 29, 2026
  • q2-quality-control Public

    A QIIME 2 plugin for quality control of sequence and feature data

    qiime2/q2-quality-control’s past year of commit activity
    Python 4 BSD-3-Clause 16 7 0 Updated Jun 26, 2026
  • q2-longitudinal Public

    QIIME 2 plugin for paired sample comparisons

    qiime2/q2-longitudinal’s past year of commit activity
    Python 9 BSD-3-Clause 18 28 (4 issues need help) 1 Updated Jun 25, 2026

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